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I really apologize that I have not been on top of this issue as much as I would have liked. I really wanted to provide the Funtoo community with a seamless transition to the new system. Unfortunately, I can't control what happens in Gentoo land, and I also happened to get extremely busy in real life at the moment when all these changes started happening. On my TODO list is an imminent overhaul of a lot of the guts of Gentoo in order to make issues like this more manageable in the future.
In the mean time, many of you have systems that are using the emul-linux-x86 packages. Unfortunately, some manual intervention is required in order to upgrade a system to the new way of doing things. This is covered [[News:Emul_Linux_Packages_Deprecation|in this news item]], but I will repeat here. First, you will need to unmerge all emul-linux-x86 packages: